2021: D.K. Moss, L.C. Ivany and D.S. Jones. Fossil bivalves and the sclerochronological reawakening. Paleobiology 2021, pp. 1-23. doi:10.1017/pab.2021.16.
2016: J.I. Bloch, E.D. Woodruff, A.R. Woods, A.F. Rincon, A.R. Harrington, G.S. Morgan, D.A. Foster, C. Montes, C.A. Jaramillo, N.A. Jud, D.S. Jones and B.J. MacFadden. First Central American fossil primate and early Miocene tropical biotic interchange. Nature 533: 243-246.
2015: B.J. MacFadden, G.S. Morgan, A.F. Rincon and D.S. Jones. Gomphothere proboscidean (Gomphotherium) from the late Miocene of Panama. Journal of Paleontology 89: 360-365.
2015: A.J.W. Hendy, D.S. Jones, F. Moreno, V. Zapata and C. Jaramillo. Neogene molluscs, shallow marine paleoenvironments, and chronostratigraphy of the Guajira Peninsula, Colombia. Swiss Journal of Palaentology 134(1): 45-75. doi:10.1007/s13358-015-0074-1.
2012: D.J. Ehret, B.J. MacFadden, D.D. Jones, T.J. DeVries, D.A. Foster and R. Salas-Gismondi. Origin of the white shark, Carcharodon (Lamniformes: Lamnidae), based on recalibration of the late Neogene, Pisco Formation of Peru. Palaeontology.
2012: I.R. Quitmyer and D.S. Jones. Annual incremental shell growth patterns in hard clams (Mercenaria spp.) from St. Catherines Island, Georgia: A record of seasonal and anthropogenic impact on zooarchaeological resources, pp. 135-148. In: E.J. Reitz, I.R. Quitmyer and D.H. Thomas, eds. Seasonality and Human Mobility along the Georgia Bight. American Museum of Natural History Anthropological Papers, Number 97, 236p.
2012: D.S. Jones, I.R. Quitmyer and C.B. DePratter. Validation of annual increments and shifting population dynamics in modern and zooarchaeological hard clams (Mercenaria mercenaria) from the Litchfield Beach region, South Carolina, pp. 149-164. In: E.J. Reitz, I.R. Quitmyer and D.H. Thomas, eds. Seasonality and Human Mobility along the Georgia Bight. American Museum of Natural History Anthropological Papers, Number 97, 236p.
2008: M.X. Kirby, D.S. Jones and B.J. MacFadden. Lower Miocene stratigraphy along the Panama Canal and its bearing on the Central American Peninsula. PLoS ONE 3(7): e2791. doi:10.1371/journal.pone.0002791
2005: D.S. Jones, I.R. Quitmyer and C. Fred T. Andrus. Oxygen isotopic evidence for greater seasonality in Holocene shells of Donax variabilis from Florida. Palaeogeography, Palaeoclimatology, Palaeoecology 228: 96-108.
2004: D.S. Jones, I.R. Quitmyer and C. Fred T. Andrus. Seasonal shell growth and longevity in Donax variabilis from northeastern Florida: Evidence from oxygen isotopes. Journal of Shellfish Research 23(3): 707-714.
2003: L.C. Ivany, B.H. Wilkinson and D.S. Jones. Using stable isotopic data to resolve rate and duration of growth throughout ontogeny: An example from the surf clam, Spisula solidissima. Palaios 18(2): 126-137.
2001: N.H. Landman, D.S. Jones, and R.A. Davis. Hatching depth ofNautilus pompilius in Fiji. The Veliger 44(4): 333-339.
2000: I.R. Quitmyer and D.S. Jones. The over-exploitation of hard clams (Mercenaria spp.) from five archaeological sites in the southeastern United States. The Florida Anthropologist 53(2-3): 160-168.
1999: D.S. Jones and S.J. Gould. Direct measurement of age in fossil Gryphaea: the solution to a classic problem in heterochrony. Paleobiology 25(2): 158-187.
1997: A.F. Randazzo and D.S. Jones, eds. The Geology of Florida. University Press of Florida, Gainesville. 327 p.